3GC

    3GC was developed in the context of the Genome Pb Project, helping to analyse the genome of Paracoccidioides brasiliensis, a dimorphic human pathologic fungus, in comparison to other pathologic and non-pathological fungus. - http://egg.dct.ufms.br/3gc/

n3GC

    n3GC is a tool to compare genes of three genomes, at sequence level. It uses the concept of BBH implemented with All-versus-all Blast search to indicate families of paralogous genes and groups of these families among three organisms. - http://egg.dct.ufms.br/n3gc/

- Timina is a Java web-based framework for automation of all steps of a genome sequencing project: submission, assembly and annotation of sequences.

http://timina.sourceforge.net/wiki/index.php/Main_Page

BioAgents

    A Multiagent Tool for Manual Annotation Recommendation on Genome Sequencing Projects.

http://bioinformatica.cenargen.embrapa.br:8080/bioagents/bioagents.html

p2pBIOCOFO

    A Peer-to-Peer system for executing bioinformatics applications: a case study of distributed and scalable information management over massive volumes of data.

PORTRAIT

    Ab Initio ncRNA predictio. PORTRAIT is suitable for ncRNA analysis of transcriptomes from poorly characterized species. Sequences are translated by software that is resistant to sequencing errors, and the predicted putative proteins, along with their source transcripts, are evaluated for coding potential by a support vector machine (SVM). Either of two SVM models may be employed: if a putative protein is found, a protein-dependent SVM model is used; if it is not found, a protein-independent SVM model is used instead. Only ab initio features are extracted, so that no homology information is needed.

http://bioinfo.cenargen.embrapa.br/portrait/

SOM-PORTRAIT

PHPH

    Electropherogram quality analysis. This suite of program analyse the sequences generated by the automatic sequencer and gives the quality using Phred  package using a web browser interface.

http://bioinfo.cenargen.embrapa.br/phph

SisGen

    SisGen is a Genome Annotation System developed at Embrapa Genetic Resources and Biotechnology - Bioinformatics Laboratory (Brasilia-Brazil) in collaboration with the BIOFOCO network (www.biofoco.org). The System integrates programs to analyze and visualize nucleotide sequences and also chromatogram outputs from automatic DNA sequencer.

http://genoma.embrapa.br